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    LOC116405532 pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like [ Cucumis sativus (cucumber) ]

    Gene ID: 116405532, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC116405532
    Gene description
    pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like
    Locus tag
    Csa_021116
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC116405532 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) Unplaced Scaffold NW_022279521.1 (14098..38767)

    NW_022279521.1Genomic Context describing neighboring genes Neighboring gene transcription factor ILR3-like Neighboring gene autophagy-related protein 18f-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022279521 Unplaced Scaffold Reference Cucumber_9930_V3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NW_022279521.1 Reference Cucumber_9930_V3 Primary Assembly

      Range
      14098..38767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031889499.1 → XP_031745359.1  pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like

      Conserved Domains (2) summary
      PLN03218
      Location:460 → 653
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:480 → 503
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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