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    LOC116088312 cytochrome c oxidase subunit 5B, mitochondrial [ Mastomys coucha (southern multimammate mouse) ]

    Gene ID: 116088312, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC116088312
    Gene description
    cytochrome c oxidase subunit 5B, mitochondrial
    See related
    EnsemblRapid:ENSMCUG00000016143
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mastomys coucha
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys
    Orthologs
    human mouse all
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    Genomic context

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    See LOC116088312 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current UCSF_Mcou_1 (GCF_008632895.1) Unplaced Scaffold NW_022196896.1 (64496207..64498148)

    NW_022196896.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116088308 Neighboring gene uncharacterized LOC116088309 Neighboring gene semaphorin 4C Neighboring gene family with sequence similarity 178 member B Neighboring gene actin related protein 1B Neighboring gene chromosome unknown C2orf92 homolog Neighboring gene small nucleolar RNA SNORA61

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022196896 Unplaced Scaffold Reference UCSF_Mcou_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mitochondrial electron transport, cytochrome c to oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome c oxidase subunit 5B, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mastomys coucha Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCSF_Mcou_1 Primary Assembly

    Genomic

    1. NW_022196896.1 Reference UCSF_Mcou_1 Primary Assembly

      Range
      64496207..64498148
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031367206.1 → XP_031223066.1  cytochrome c oxidase subunit 5B, mitochondrial

      Related
      ENSMCUP00000018201.1, ENSMCUT00000023551.1
      Conserved Domains (1) summary
      cd00924
      Location:32 → 126
      Cyt_c_Oxidase_Vb; Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of ...
    Nucleotide Protein
    Heading Accession and Version

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