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    KATNB1 katanin regulatory subunit B1 [ Strigops habroptila (Kakapo) ]

    Gene ID: 115601177, updated on 3-Aug-2024

    Summary

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    Gene symbol
    KATNB1
    Gene description
    katanin regulatory subunit B1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strigops habroptila
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
    Orthologs
    human mouse all
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    Genomic context

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    See KATNB1 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    101 current bStrHab1.2.pri (GCF_004027225.2) Z NC_044302.2 (21999528..22020883, complement)
    100 previous assembly bStrHab1_v1.p (GCF_004027225.1) Z NC_044302.1 (21999528..22020883, complement)

    Chromosome Z - NC_044302.2Genomic Context describing neighboring genes Neighboring gene U6 snRNA biogenesis phosphodiesterase 1 Neighboring gene zinc finger protein 319 Neighboring gene cyclic nucleotide gated channel subunit beta 1 Neighboring gene kinesin family member C3 Neighboring gene uncharacterized LOC115601179 Neighboring gene dynein regulatory complex subunit 7 Neighboring gene uromodulin-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule depolymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in microtubule severing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of katanin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    katanin p80 WD40 repeat-containing subunit B1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bStrHab1.2.pri

    Genomic

    1. NC_044302.2 Reference bStrHab1.2.pri

      Range
      21999528..22020883 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030470823.1 → XP_030326683.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

      UniProtKB/TrEMBL
      A0A672TPN7
      Conserved Domains (3) summary
      cd00200
      Location:7 → 257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:67 → 103
      7WD40; WD40 repeat [structural motif]
      pfam13925
      Location:500 → 616
      Katanin_con80; con80 domain of Katanin

    2. XM_030470824.2 → XP_030326684.1  katanin p80 WD40 repeat-containing subunit B1 isoform X2

      Conserved Domains (4) summary
      PHA03247
      Location:395 → 521
      PHA03247; large tegument protein UL36; Provisional
      cd00200
      Location:7 → 257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:67 → 103
      7WD40; WD40 repeat [structural motif]
      pfam13925
      Location:499 → 615
      Katanin_con80; con80 domain of Katanin

    3. XM_030470826.1 → XP_030326686.1  katanin p80 WD40 repeat-containing subunit B1 isoform X3

      UniProtKB/TrEMBL
      A0A672TNI9
      Conserved Domains (3) summary
      cd00200
      Location:7 → 257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:67 → 103
      7WD40; WD40 repeat [structural motif]
      pfam13925
      Location:500 → 651
      Katanin_con80; con80 domain of Katanin

    4. XM_030470827.2 → XP_030326687.1  katanin p80 WD40 repeat-containing subunit B1 isoform X4

      Conserved Domains (4) summary
      PHA03247
      Location:395 → 521
      PHA03247; large tegument protein UL36; Provisional
      cd00200
      Location:7 → 257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:67 → 103
      7WD40; WD40 repeat [structural motif]
      pfam13925
      Location:499 → 650
      Katanin_con80; con80 domain of Katanin
    Nucleotide Protein
    Heading Accession and Version

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