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    snx5 sorting nexin 5 [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115559792, updated on 17-Mar-2024

    Summary

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    Gene symbol
    snx5
    Gene description
    sorting nexin 5
    See related
    Ensembl:ENSGMOG00000018289
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    human zebrafish all
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    Genomic context

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    See snx5 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 15 NC_044062.1 (5797266..5804458, complement)

    Chromosome 15 - NC_044062.1Genomic Context describing neighboring genes Neighboring gene ribosome-binding protein 1-like Neighboring gene cofilin 1 (non-muscle), like Neighboring gene glycine N-acyltransferase-like protein 3 Neighboring gene mitochondrial genome maintenance exonuclease 1 Neighboring gene cystatin-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044062.1 Chromosome 15 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dynactin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pinocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044062.1 Reference gadMor3.0 Primary Assembly

      Range
      5797266..5804458 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030378887.1 → XP_030234747.1  sorting nexin-5

      UniProtKB/TrEMBL
      A0A8C5A279, A0A8C5CUU1
      Related
      ENSGMOP00000025647.1, ENSGMOT00000033864.1
      Conserved Domains (2) summary
      cl02563
      Location:25 → 164
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
      cl12013
      Location:180 → 397
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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