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    LOC115557012 Ras association domain family member 1 [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115557012, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC115557012
    Gene description
    Ras association domain family member 1
    See related
    Ensembl:ENSGMOG00000016097
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Also known as
    rassf1
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    Genomic context

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    See LOC115557012 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 13 NC_044060.1 (9210220..9221175, complement)

    Chromosome 13 - NC_044060.1Genomic Context describing neighboring genes Neighboring gene hyaluronidase 1 Neighboring gene hyaluronidase 2a Neighboring gene tumor suppressor 2, mitochondrial calcium regulator a Neighboring gene uncharacterized LOC115557019 Neighboring gene zinc finger, MYND-type containing 10 Neighboring gene NPR2 like, GATOR1 complex subunit Neighboring gene HemK methyltransferase family member 1 Neighboring gene cytokine inducible SH2 containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044060.1 Chromosome 13 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Ras protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in microtubule cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ras association domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044060.1 Reference gadMor3.0 Primary Assembly

      Range
      9210220..9221175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030374539.1 → XP_030230399.1  ras association domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C5A0R4, A0A8C5BT47
      Conserved Domains (3) summary
      cd00029
      Location:74 → 123
      C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
      pfam16517
      Location:322 → 361
      Nore1-SARAH; Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
      cl28922
      Location:160 → 313
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    2. XM_030374538.1 → XP_030230398.1  ras association domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C5A0R4, A0A8C5BT47
      Related
      ENSGMOP00000024381.1, ENSGMOT00000057337.1
      Conserved Domains (3) summary
      cd00029
      Location:74 → 123
      C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
      pfam16517
      Location:322 → 361
      Nore1-SARAH; Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
      cl28922
      Location:160 → 313
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    3. XM_030374540.1 → XP_030230400.1  ras association domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C5C846
      Related
      ENSGMOP00000056837.1, ENSGMOT00000044584.1
      Conserved Domains (2) summary
      pfam16517
      Location:235 → 274
      Nore1-SARAH; Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
      cl28922
      Location:73 → 226
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    Nucleotide Protein
    Heading Accession and Version

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