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    aspn asporin (LRR class 1) [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115556740, updated on 17-Mar-2024

    Summary

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    Gene symbol
    aspn
    Gene description
    asporin (LRR class 1)
    See related
    Ensembl:ENSGMOG00000002875
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    human zebrafish all
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    Genomic context

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    See aspn in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 13 NC_044060.1 (4719063..4723976)

    Chromosome 13 - NC_044060.1Genomic Context describing neighboring genes Neighboring gene inositol 1,3,4,5,6-pentakisphosphate 2-kinase Neighboring gene centromere protein P Neighboring gene extracellular matrix protein 2, female organ and adipocyte specific Neighboring gene osteoglycin, paralog a Neighboring gene nucleolar protein 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044060.1 Chromosome 13 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    asporin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044060.1 Reference gadMor3.0 Primary Assembly

      Range
      4719063..4723976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030374014.1 → XP_030229874.1  asporin

      UniProtKB/TrEMBL
      A0A8C4YYF4
      Related
      ENSGMOP00000003025.2, ENSGMOT00000003122.2
      Conserved Domains (2) summary
      sd00033
      Location:81 → 100
      LRR_RI; leucine-rich repeat [structural motif]
      NF033189
      Location:83 → 360
      internalin_A; class 1 internalin InlA
    Nucleotide Protein
    Heading Accession and Version

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