U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC115556699 vitamin D3 receptor B [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115556699, updated on 23-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC115556699
    Gene description
    vitamin D3 receptor B
    See related
    Ensembl:ENSGMOG00000019451
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC115556699 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 13 NC_044060.1 (21661808..21698967)

    Chromosome 13 - NC_044060.1Genomic Context describing neighboring genes Neighboring gene tensin-2-like Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene histone deacetylase 7-like Neighboring gene uncharacterized LOC115556580 Neighboring gene twist-related protein 2-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_044060.1 Chromosome 13 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables vitamin D response element binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    vitamin D3 receptor B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044060.1 Reference gadMor3.0 Primary Assembly

      Range
      21661808..21698967
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030373928.1 → XP_030229788.1  vitamin D3 receptor B isoform X2

      UniProtKB/TrEMBL
      A0A8C4ZJR6, A0A8C4ZRP1
      Related
      ENSGMOP00000013607.2, ENSGMOT00000013965.2
      Conserved Domains (2) summary
      cd06955
      Location:16 → 121
      NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
      cl11397
      Location:128 → 424
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    2. XM_030373932.1 → XP_030229792.1  vitamin D3 receptor B isoform X2

      UniProtKB/TrEMBL
      A0A8C4ZJR6, A0A8C4ZRP1
      Related
      ENSGMOP00000020924.2, ENSGMOT00000021436.2
      Conserved Domains (2) summary
      cd06955
      Location:16 → 121
      NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
      cl11397
      Location:128 → 424
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    3. XM_030373930.1 → XP_030229790.1  vitamin D3 receptor B isoform X2

      UniProtKB/TrEMBL
      A0A8C4ZJR6, A0A8C4ZRP1
      Conserved Domains (2) summary
      cd06955
      Location:16 → 121
      NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
      cl11397
      Location:128 → 424
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    4. XM_030373929.1 → XP_030229789.1  vitamin D3 receptor B isoform X2

      UniProtKB/TrEMBL
      A0A8C4ZJR6, A0A8C4ZRP1
      Conserved Domains (2) summary
      cd06955
      Location:16 → 121
      NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
      cl11397
      Location:128 → 424
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    5. XM_030373933.1 → XP_030229793.1  vitamin D3 receptor B isoform X2

      UniProtKB/TrEMBL
      A0A8C4ZJR6, A0A8C4ZRP1
      Conserved Domains (2) summary
      cd06955
      Location:16 → 121
      NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
      cl11397
      Location:128 → 424
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    6. XM_030373931.1 → XP_030229791.1  vitamin D3 receptor B isoform X2

      UniProtKB/TrEMBL
      A0A8C4ZJR6, A0A8C4ZRP1
      Conserved Domains (2) summary
      cd06955
      Location:16 → 121
      NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
      cl11397
      Location:128 → 424
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    7. XM_030373926.1 → XP_030229786.1  vitamin D3 receptor B isoform X1

      UniProtKB/TrEMBL
      A0A8C4ZRP1
      Conserved Domains (2) summary
      cd06955
      Location:29 → 134
      NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
      cl11397
      Location:141 → 437
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.