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    sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115556002, updated on 17-Mar-2024

    Summary

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    Gene symbol
    sgta
    Gene description
    small glutamine rich tetratricopeptide repeat co-chaperone alpha
    See related
    Ensembl:ENSGMOG00000016369
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    human zebrafish all
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    Genomic context

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    See sgta in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 12 NC_044059.1 (290607..300342)

    Chromosome 12 - NC_044059.1Genomic Context describing neighboring genes Neighboring gene NACHT and WD repeat domain containing 1 Neighboring gene thimet oligopeptidase 1 Neighboring gene solute carrier family 1 member 8a Neighboring gene uncharacterized LOC115556234

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044059.1 Chromosome 12 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables molecular adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in post-translational protein targeting to endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of TRC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small glutamine-rich tetratricopeptide repeat-containing protein alpha
    Names
    small glutamine rich tetratricopeptide repeat containing alpha
    small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044059.1 Reference gadMor3.0 Primary Assembly

      Range
      290607..300342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030373088.1 → XP_030228948.1  small glutamine-rich tetratricopeptide repeat-containing protein alpha

      UniProtKB/TrEMBL
      A0A8C5BNC9, A0A8C5CPP3
      Conserved Domains (3) summary
      PLN03088
      Location:106 → 216
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      sd00006
      Location:92 → 120
      TPR; TPR repeat [structural motif]
      pfam16546
      Location:5 → 64
      SGTA_dimer; Homodimerization domain of SGTA

    2. XM_030373087.1 → XP_030228947.1  small glutamine-rich tetratricopeptide repeat-containing protein alpha

      UniProtKB/TrEMBL
      A0A8C5BNC9, A0A8C5CPP3
      Related
      ENSGMOP00000065303.1, ENSGMOT00000068933.1
      Conserved Domains (3) summary
      PLN03088
      Location:106 → 216
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      sd00006
      Location:92 → 120
      TPR; TPR repeat [structural motif]
      pfam16546
      Location:5 → 64
      SGTA_dimer; Homodimerization domain of SGTA
    Nucleotide Protein
    Heading Accession and Version

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