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    atl1 atlastin GTPase 1 [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115544065, updated on 17-Mar-2024

    Summary

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    Gene symbol
    atl1
    Gene description
    atlastin GTPase 1
    See related
    Ensembl:ENSGMOG00000001077
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    human zebrafish all
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    Genomic context

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    See atl1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 5 NC_044052.1 (18775431..18786507)

    Chromosome 5 - NC_044052.1Genomic Context describing neighboring genes Neighboring gene distal membrane arm assembly component 2 like Neighboring gene cyclin-dependent kinase-like 1 (CDC2-related kinase) Neighboring gene mitogen-activated protein kinase kinase kinase kinase 5 Neighboring gene salvador family WW domain containing protein 1 Neighboring gene ninein (GSK3B interacting protein)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044052.1 Chromosome 5 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    atlastin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044052.1 Reference gadMor3.0 Primary Assembly

      Range
      18775431..18786507
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030356868.1 → XP_030212728.1  atlastin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8C5CHD2
      Conserved Domains (1) summary
      cl38936
      Location:45 → 311
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_030356869.1 → XP_030212729.1  atlastin-1 isoform X2

      UniProtKB/TrEMBL
      A0A8C5BJH4, A0A8C5CHD2
      Related
      ENSGMOP00000047033.1, ENSGMOT00000024915.1
      Conserved Domains (1) summary
      cl38936
      Location:43 → 309
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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