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    LOC115542386 transmembrane protein 47-like [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115542386, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC115542386
    Gene description
    transmembrane protein 47-like
    See related
    Ensembl:ENSGMOG00000010573
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
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    Genomic context

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    See LOC115542386 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 4 NC_044051.1 (36040732..36049059)

    Chromosome 4 - NC_044051.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115542411 Neighboring gene E3 ubiquitin-protein ligase TRIM39-like Neighboring gene dystrophin-like Neighboring gene adenosine receptor A1-like Neighboring gene general transcription factor IIIC, polypeptide 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044051.1 Chromosome 4 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane protein 47-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044051.1 Reference gadMor3.0 Primary Assembly

      Range
      36040732..36049059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030354653.1 → XP_030210513.1  transmembrane protein 47-like

      UniProtKB/TrEMBL
      A0A8C4ZBE2
      Related
      ENSGMOP00000011321.2, ENSGMOT00000011626.2
      Conserved Domains (1) summary
      cl21598
      Location:22 → 171
      PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
    Nucleotide Protein
    Heading Accession and Version

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