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    LOC115541404 26S proteasome regulatory subunit 6A-B [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115541404, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC115541404
    Gene description
    26S proteasome regulatory subunit 6A-B
    See related
    Ensembl:ENSGMOG00000034014
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
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    Genomic context

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    See LOC115541404 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 4 NC_044051.1 (43329236..43340274, complement)

    Chromosome 4 - NC_044051.1Genomic Context describing neighboring genes Neighboring gene histone H3.v1-like Neighboring gene vacuolar protein sorting-associated protein 16 homolog Neighboring gene CD59 glycoprotein-like Neighboring gene F-box only protein 3-like Neighboring gene prothrombin-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044051.1 Chromosome 4 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proteasome-activating activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proteasome regulatory particle, base subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    26S proteasome regulatory subunit 6A-A; 26S proteasome regulatory subunit 6A-B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044051.1 Reference gadMor3.0 Primary Assembly

      Range
      43329236..43340274 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030353107.1 → XP_030208967.1  26S proteasome regulatory subunit 6A-A isoform X2

      UniProtKB/TrEMBL
      A0A8C4ZET2
      Conserved Domains (1) summary
      COG1222
      Location:12 → 365
      RPT1; ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

    2. XM_030353106.1 → XP_030208966.1  26S proteasome regulatory subunit 6A-B isoform X1

      UniProtKB/TrEMBL
      A0A8C4ZET2, A0A8C5BXT5
      Related
      ENSGMOP00000026336.1, ENSGMOT00000031817.1
      Conserved Domains (1) summary
      COG1222
      Location:12 → 420
      RPT1; ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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