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    FDPS farnesyl diphosphate synthase [ Microcaecilia unicolor ]

    Gene ID: 115458043, updated on 17-Mar-2024

    Summary

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    Gene symbol
    FDPS
    Gene description
    farnesyl diphosphate synthase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Microcaecilia unicolor
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
    Orthologs
    human mouse all
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    Genomic context

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    See FDPS in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current aMicUni1.1 (GCF_901765095.1) 14 NC_044044.1 (39464565..39476553, complement)

    Chromosome 14 - NC_044044.1Genomic Context describing neighboring genes Neighboring gene death associated protein 3 Neighboring gene ASH1 like histone lysine methyltransferase Neighboring gene RUN and SH3 domain containing 1 Neighboring gene pyruvate kinase L/R Neighboring gene CDC like kinase 2 Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044044.1 Chromosome 14 Reference aMicUni1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dimethylallyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables geranyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in farnesyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: farnesyl pyrophosphate synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aMicUni1.1 Primary Assembly

    Genomic

    1. NC_044044.1 Reference aMicUni1.1 Primary Assembly

      Range
      39464565..39476553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030187824.1 → XP_030043684.1  LOW QUALITY PROTEIN: farnesyl pyrophosphate synthase

      UniProtKB/TrEMBL
      A0A6P7X0L2
      Conserved Domains (1) summary
      pfam00348
      Location:9 → 237
      polyprenyl_synt; Polyprenyl synthetase
    Nucleotide Protein
    Heading Accession and Version

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