U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC115204635 uncharacterized LOC115204635 [ Salmo trutta (river trout) ]

    Gene ID: 115204635, updated on 24-Jul-2021

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC115204635
    Gene description
    uncharacterized LOC115204635
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo trutta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC115204635 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    100 current fSalTru1.1 (GCF_901001165.1) 1 NC_042957.1 (62613853..62807456)

    Chromosome 1 - NC_042957.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115204769 Neighboring gene Ig heavy chain V region 5A-like Neighboring gene immunoglobulin heavy variable 1-69-2-like Neighboring gene immunoglobulin gamma-1 heavy chain-like Neighboring gene uncharacterized LOC115204792 Neighboring gene Ig heavy chain V region T601-like Neighboring gene nucleus accumbens-associated protein 1-like Neighboring gene immediate early response gene 2 protein-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_042957.1 Chromosome 1 Reference fSalTru1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Analysis of two IgM isotypes in Atlantic salmon and brown trout. Hordvik I, et al. Mol Immunol, 2002 Oct. PMID 12220889
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC115204635
    Names
    IgM-B heavy chain constant region
    immunoglobulin delta heavy chain
    immunoglobulin mu heavy chain

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalTru1.1 Primary Assembly

    Genomic

    1. NC_042957.1 Reference fSalTru1.1 Primary Assembly

      Range
      62613853..62807456
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029770316.1 → XP_029626176.1  uncharacterized protein LOC115204635 isoform X1

    2. XM_029770362.1 → XP_029626222.1  uncharacterized protein LOC115204635 isoform X5

    3. XM_029770343.1 → XP_029626203.1  uncharacterized protein LOC115204635 isoform X4

    4. XM_029770335.1 → XP_029626195.1  uncharacterized protein LOC115204635 isoform X3

      Conserved Domains (3) summary
      cd00098
      Location:2458 → 2552
      IgC; Immunoglobulin Constant (IgC) domain
      cd04985
      Location:11 → 101
      IgC_CH1_IgAEGM; CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin
      cl11960
      Location:431 → 518
      Ig; Immunoglobulin domain

    5. XM_029770326.1 → XP_029626186.1  uncharacterized protein LOC115204635 isoform X2

      Conserved Domains (3) summary
      cd00098
      Location:2495 → 2589
      IgC; Immunoglobulin Constant (IgC) domain
      cd04985
      Location:48 → 138
      IgC_CH1_IgAEGM; CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin
      cl11960
      Location:468 → 555
      Ig; Immunoglobulin domain

    6. XM_029770352.1 → XP_029626212.1  uncharacterized protein LOC115204635 isoform X4

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases