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    LOC115167864 retinoic acid receptor gamma-A [ Salmo trutta (river trout) ]

    Gene ID: 115167864, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC115167864
    Gene description
    retinoic acid receptor gamma-A
    See related
    Ensembl:ENSSTUG00000048976
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo trutta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    See LOC115167864 in Genome Data Viewer
    Location:
    chromosome: 30
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current fSalTru1.1 (GCF_901001165.1) 30 NC_042986.1 (9290629..9408490)

    Chromosome 30 - NC_042986.1Genomic Context describing neighboring genes Neighboring gene protein lifeguard 2-like Neighboring gene molybdate-anion transporter-like Neighboring gene nuclear receptor subfamily 1 group D member 1-like Neighboring gene uncharacterized LOC115167866 Neighboring gene calcium-binding and coiled-coil domain-containing protein 1-like Neighboring gene homeobox protein Hox-C13a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042986.1 Chromosome 30 Reference fSalTru1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear glucocorticoid receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to corticotropin-releasing hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor gamma-A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalTru1.1 Primary Assembly

    Genomic

    1. NC_042986.1 Reference fSalTru1.1 Primary Assembly

      Range
      9290629..9408490
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029722563.1 → XP_029578423.1  retinoic acid receptor gamma-A isoform X1

      UniProtKB/TrEMBL
      A0A674EQF5
      Conserved Domains (2) summary
      cd06937
      Location:189 → 419
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:83 → 168
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    2. XM_029722562.1 → XP_029578422.1  retinoic acid receptor gamma-A isoform X1

      UniProtKB/TrEMBL
      A0A674EQF5
      Conserved Domains (2) summary
      cd06937
      Location:189 → 419
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:83 → 168
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    3. XM_029722567.1 → XP_029578427.1  retinoic acid receptor gamma-A isoform X1

      UniProtKB/TrEMBL
      A0A674EQF5
      Conserved Domains (2) summary
      cd06937
      Location:189 → 419
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:83 → 168
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    4. XM_029722569.1 → XP_029578429.1  retinoic acid receptor gamma-A isoform X3

      UniProtKB/TrEMBL
      A0A674EQF5
      Conserved Domains (2) summary
      cd06937
      Location:186 → 416
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 165
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    5. XM_029722568.1 → XP_029578428.1  retinoic acid receptor gamma-A isoform X2

      UniProtKB/TrEMBL
      A0A674EQF5, A0A674ERH3
      Related
      ENSSTUP00000110409.1, ENSSTUT00000118203.1
      Conserved Domains (2) summary
      cd06937
      Location:187 → 417
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 166
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    6. XM_029722565.1 → XP_029578425.1  retinoic acid receptor gamma-A isoform X1

      UniProtKB/TrEMBL
      A0A674EQF5
      Conserved Domains (2) summary
      cd06937
      Location:189 → 419
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:83 → 168
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    7. XM_029722564.1 → XP_029578424.1  retinoic acid receptor gamma-A isoform X1

      UniProtKB/TrEMBL
      A0A674EQF5
      Conserved Domains (2) summary
      cd06937
      Location:189 → 419
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:83 → 168
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    8. XM_029722570.1 → XP_029578430.1  retinoic acid receptor gamma-A isoform X4

      UniProtKB/TrEMBL
      A0A674ES17
      Conserved Domains (2) summary
      cd06937
      Location:178 → 408
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:72 → 157
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    9. XM_029722571.1 → XP_029578431.1  retinoic acid receptor gamma-A isoform X5

      UniProtKB/TrEMBL
      A0A674EQG5, A0A674ES17
      Related
      ENSSTUP00000110431.1, ENSSTUT00000118226.1
    Nucleotide Protein
    Heading Accession and Version

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