U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Slc6a4 solute carrier family 6 member 4 [ Peromyscus leucopus (white-footed mouse) ]

    Gene ID: 114691461, updated on 15-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Slc6a4
    Gene description
    solute carrier family 6 member 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Peromyscus leucopus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Slc6a4 in Genome Data Viewer
    Location:
    chromosome: 8b
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    101 current UCI_PerLeu_2.1 (GCF_004664715.2) 8b NC_051086.1 (60273602..60308627)
    100 previous assembly Pero_0.1 (GCF_004664715.1) Unplaced Scaffold NW_021630165.1 (3025464..3060471)

    Chromosome 8b - NC_051086.1Genomic Context describing neighboring genes Neighboring gene transmembrane and immunoglobulin domain containing 1 Neighboring gene U1 spliceosomal RNA Neighboring gene bleomycin hydrolase Neighboring gene small nucleolar RNA SNORA33 Neighboring gene nuclear speckle splicing regulatory protein 1 Neighboring gene EF-hand calcium binding domain 5 Neighboring gene slingshot protein phosphatase 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serotonin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serotonin:sodium:chloride symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in serotonin uptake IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    sodium-dependent serotonin transporter

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Peromyscus leucopus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCI_PerLeu_2.1 Primary Assembly

    Genomic

    1. NC_051086.1 Reference UCI_PerLeu_2.1 Primary Assembly

      Range
      60273602..60308627
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028866798.2 → XP_028722631.1  sodium-dependent serotonin transporter

      Conserved Domains (2) summary
      cd11513
      Location:80 → 616
      SLC6sbd_SERT; Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain
      pfam03491
      Location:24 → 64
      5HT_transport_N; Serotonin (5-HT) neurotransmitter transporter, N-terminus
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.