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    LOC114600573 aspartyl/asparaginyl beta-hydroxylase-like [ Podarcis muralis (Common wall lizard) ]

    Gene ID: 114600573, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC114600573
    Gene description
    aspartyl/asparaginyl beta-hydroxylase-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Podarcis muralis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis
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    Genomic context

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    See LOC114600573 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current PodMur_1.0 (GCF_004329235.1) 7 NC_041318.1 (37656693..37687492)

    Chromosome 7 - NC_041318.1Genomic Context describing neighboring genes Neighboring gene gamma-glutamyl hydrolase Neighboring gene sodium/potassium transporting ATPase interacting 3 Neighboring gene uncharacterized LOC114601318 Neighboring gene aspartyl/asparaginyl beta-hydroxylase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041318.1 Chromosome 7 Reference PodMur_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-aspartic acid 3-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-aspartic acid hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aspartyl/asparaginyl beta-hydroxylase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Podarcis muralis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PodMur_1.0 Primary Assembly

    Genomic

    1. NC_041318.1 Reference PodMur_1.0 Primary Assembly

      Range
      37656693..37687492
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028736865.1 → XP_028592698.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X4

      Conserved Domains (1) summary
      pfam05279
      Location:27 → 108
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

    2. XM_028736860.1 → XP_028592693.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

      Conserved Domains (1) summary
      pfam05279
      Location:27 → 233
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

    3. XM_028736863.1 → XP_028592696.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

      Conserved Domains (1) summary
      pfam05279
      Location:27 → 218
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

    4. XM_028736864.1 → XP_028592697.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

      Conserved Domains (1) summary
      pfam05279
      Location:14 → 205
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

    5. XM_028736866.1 → XP_028592699.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X5

      Conserved Domains (1) summary
      pfam05279
      Location:14 → 220
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    Nucleotide Protein
    Heading Accession and Version

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