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    tbl1xr1a TBL1X/Y related 1a [ Perca flavescens (yellow perch) ]

    Gene ID: 114561209, updated on 15-Mar-2024

    Summary

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    Gene symbol
    tbl1xr1a
    Gene description
    TBL1X/Y related 1a
    Locus tag
    EPR50_G00095830
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Perca flavescens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
    Also known as
    tbl1xr1
    Orthologs
    human zebrafish all
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    Genomic context

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    See tbl1xr1a in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current PFLA_1.0 (GCF_004354835.1) 9 NC_041339.1 (7449750..7516620)

    Chromosome 9 - NC_041339.1Genomic Context describing neighboring genes Neighboring gene S100 calcium binding protein P Neighboring gene uncharacterized LOC114561029 Neighboring gene uncharacterized LOC114561894 Neighboring gene uncharacterized protein KIAA1211 homolog Neighboring gene uncharacterized LOC114561895

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041339.1 Chromosome 9 Reference PFLA_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box-like/WD repeat-containing protein TBL1XR1
    Names
    TBL1X receptor 1
    tbl1x receptor 1a
    transducin beta like 1 X-linked receptor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PFLA_1.0 Primary Assembly

    Genomic

    1. NC_041339.1 Reference PFLA_1.0 Primary Assembly

      Range
      7449750..7516620
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028587039.1 → XP_028442840.1  F-box-like/WD repeat-containing protein TBL1XR1

      UniProtKB/TrEMBL
      A0A484CZ31
      Conserved Domains (3) summary
      cd00200
      Location:165 → 471
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:270 → 307
      7WD40; WD40 repeat [structural motif]
      pfam08513
      Location:7 → 31
      LisH
    Nucleotide Protein
    Heading Accession and Version

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