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    CHD4 chromodomain helicase DNA binding protein 4 [ Phyllostomus discolor (pale spear-nosed bat) ]

    Gene ID: 114512672, updated on 30-Mar-2024

    Summary

    Gene symbol
    CHD4
    Gene description
    chromodomain helicase DNA binding protein 4
    See related
    EnsemblRapid:ENSPDIG00005017392
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phyllostomus discolor
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Phyllostominae; Phyllostomus
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See CHD4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    101 current mPhyDis1.pri.v3 (GCF_004126475.2) 2 NC_040904.2 (195369863..195398994)
    100 previous assembly mPhyDis1_v1.p (GCF_004126475.1) 2 Unlocalized Scaffold NW_021126247.1 (50131070..50160330)

    Chromosome 2 - NC_040904.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118498677 Neighboring gene acrosin binding protein Neighboring gene lysophosphatidic acid receptor 5 Neighboring gene keratin, type I cytoskeletal 18-like Neighboring gene small Cajal body-specific RNA 11 Neighboring gene NOP2 nucleolar protein Neighboring gene intermediate filament family orphan 1

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of NuRD complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    chromodomain-helicase-DNA-binding protein 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Phyllostomus discolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mPhyDis1.pri.v3

    Genomic

    1. NC_040904.2 Reference mPhyDis1.pri.v3

      Range
      195369863..195398994
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036017306.1XP_035873199.1  chromodomain-helicase-DNA-binding protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A7E6D4G4
      Conserved Domains (10) summary
      PLN03142
      Location:7241281
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:372414
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:451493
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:619673
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:498576
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18056
      Location:726957
      DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
      pfam06461
      Location:14131549
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:13021345
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:164217
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:17541879
      CHDCT2; CHDCT2 (NUC038) domain
    2. XM_036017309.1XP_035873202.1  chromodomain-helicase-DNA-binding protein 4 isoform X5

      UniProtKB/TrEMBL
      A0A7E6D1U8
      Conserved Domains (10) summary
      PLN03142
      Location:7241281
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:372414
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:451493
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:619673
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:498576
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18056
      Location:726957
      DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
      pfam06461
      Location:13851521
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:13021345
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:164217
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:17261851
      CHDCT2; CHDCT2 (NUC038) domain
    3. XM_036017310.1XP_035873203.1  chromodomain-helicase-DNA-binding protein 4 isoform X7

      UniProtKB/TrEMBL
      A0A7E6D1S0
      Conserved Domains (10) summary
      PLN03142
      Location:7241281
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:372414
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:451493
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:619673
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:498576
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18056
      Location:726957
      DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
      pfam06461
      Location:13841520
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:13011344
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:164217
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:17251850
      CHDCT2; CHDCT2 (NUC038) domain
    4. XM_036017312.1XP_035873205.1  chromodomain-helicase-DNA-binding protein 4 isoform X10

      UniProtKB/TrEMBL
      A0A7E6D1Q8
      Conserved Domains (10) summary
      PLN03142
      Location:7111268
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:359401
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:438480
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:606660
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:485563
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18056
      Location:713944
      DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
      pfam06461
      Location:13721508
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:12891332
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:164217
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:17131838
      CHDCT2; CHDCT2 (NUC038) domain
    5. XM_036017311.1XP_035873204.1  chromodomain-helicase-DNA-binding protein 4 isoform X8

      UniProtKB/TrEMBL
      A0A7E6D4G8
      Conserved Domains (10) summary
      PLN03142
      Location:7171274
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:365407
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:444486
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:612666
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:491569
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18056
      Location:719950
      DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
      pfam06461
      Location:13781514
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:12951338
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:157210
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:17191844
      CHDCT2; CHDCT2 (NUC038) domain
    6. XM_036017315.1XP_035873208.1  chromodomain-helicase-DNA-binding protein 4 isoform X12

      UniProtKB/TrEMBL
      A0A7E6D1S8
      Conserved Domains (10) summary
      PLN03142
      Location:7041261
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:352394
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:431473
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:599653
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:478556
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18056
      Location:706937
      DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
      pfam06461
      Location:13651501
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:12821325
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:157210
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:17061831
      CHDCT2; CHDCT2 (NUC038) domain
    7. XM_028531629.2XP_028387430.1  chromodomain-helicase-DNA-binding protein 4 isoform X6

      UniProtKB/TrEMBL
      A0A6J2NBU9
      Conserved Domains (10) summary
      PLN03142
      Location:7241281
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:372414
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:451493
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      pfam06461
      Location:13851521
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam08074
      Location:17261896
      CHDCT2; CHDCT2 (NUC038) domain
      pfam06465
      Location:13021351
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:164217
      CHDNT; CHDNT (NUC034) domain
      cd18662
      Location:619673
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:498576
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18056
      Location:726957
      DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
    8. XM_028531631.2XP_028387432.1  chromodomain-helicase-DNA-binding protein 4 isoform X9

      UniProtKB/TrEMBL
      A0A6J2N4K8
      Related
      ENSPDIP00005024584.2, ENSPDIT00005028446.2
      Conserved Domains (10) summary
      PLN03142
      Location:7171274
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:365407
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:444486
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      pfam06461
      Location:13781514
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam08074
      Location:17191889
      CHDCT2; CHDCT2 (NUC038) domain
      pfam06465
      Location:12951344
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:157210
      CHDNT; CHDNT (NUC034) domain
      cd18662
      Location:612666
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:491569
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18056
      Location:719950
      DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
    9. XM_028531632.2XP_028387433.1  chromodomain-helicase-DNA-binding protein 4 isoform X13

      UniProtKB/TrEMBL
      A0A6J2NB54
      Conserved Domains (10) summary
      PLN03142
      Location:7041261
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:352394
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:431473
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      pfam06461
      Location:13651501
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam08074
      Location:17061876
      CHDCT2; CHDCT2 (NUC038) domain
      pfam06465
      Location:12821331
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:157210
      CHDNT; CHDNT (NUC034) domain
      cd18662
      Location:599653
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:478556
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18056
      Location:706937
      DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
    10. XM_036017313.1XP_035873206.1  chromodomain-helicase-DNA-binding protein 4 isoform X11

      UniProtKB/TrEMBL
      A0A7E6D2L4
      Conserved Domains (10) summary
      PLN03142
      Location:7111268
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:359401
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:438480
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:606660
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:485563
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18056
      Location:713944
      DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
      pfam06461
      Location:13721508
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:12891332
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:164217
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:17131838
      CHDCT2; CHDCT2 (NUC038) domain
    11. XM_028531628.2XP_028387429.1  chromodomain-helicase-DNA-binding protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A6J2N6I6
      Conserved Domains (10) summary
      PLN03142
      Location:7171274
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:365407
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:444486
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      pfam06461
      Location:14061542
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam08074
      Location:17471917
      CHDCT2; CHDCT2 (NUC038) domain
      pfam06465
      Location:12951344
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:157210
      CHDNT; CHDNT (NUC034) domain
      cd18662
      Location:612666
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:491569
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18056
      Location:719950
      DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
    12. XM_036017307.1XP_035873200.1  chromodomain-helicase-DNA-binding protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A7E6D1Q4
      Conserved Domains (10) summary
      PLN03142
      Location:7241281
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:372414
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:451493
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:619673
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:498576
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18056
      Location:726957
      DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
      pfam06461
      Location:14131549
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:13021345
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:164217
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:17541879
      CHDCT2; CHDCT2 (NUC038) domain
    13. XM_036017308.1XP_035873201.1  chromodomain-helicase-DNA-binding protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A7E6D2K9
      Conserved Domains (10) summary
      PLN03142
      Location:7171274
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd15531
      Location:365407
      PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd15532
      Location:444486
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18662
      Location:612666
      CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18667
      Location:491569
      CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
      cd18056
      Location:719950
      DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
      pfam06461
      Location:14061542
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:12951338
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08073
      Location:157210
      CHDNT; CHDNT (NUC034) domain
      pfam08074
      Location:17471872
      CHDCT2; CHDCT2 (NUC038) domain