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    LOC11438511 chalcone synthase 1A [ Medicago truncatula (barrel medic) ]

    Gene ID: 11438511, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11438511
    Gene description
    chalcone synthase 1A
    Locus tag
    MtrunA17_Chr3g0121541
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11438511 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (41319439..41321079, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (37862358..37863989, complement)

    Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112420433 Neighboring gene chalcone synthase 1B Neighboring gene probable magnesium transporter NIPA2 Neighboring gene small subunit processome component 20 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in polyketide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chalcone synthase 1A
    Names
    chalcone and stilbene synthase family protein
    putative naringenin-chalcone synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      41319439..41321079 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003601600.4 → XP_003601648.1  chalcone synthase 1A

      See identical proteins and their annotated locations for XP_003601648.1

      UniProtKB/TrEMBL
      G7JA71, Q9FEW4
      Conserved Domains (1) summary
      cl28398
      Location:1 → 389
      PLN03169; chalcone synthase family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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