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    LOC11436750 WD repeat-containing protein 44 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11436750, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11436750
    Gene description
    WD repeat-containing protein 44
    Locus tag
    MtrunA17_Chr8g0384061
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11436750 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (43112189..43117191)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (38950295..38955317)

    Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 27 Neighboring gene uncharacterized LOC11428944 Neighboring gene uridylate kinase Neighboring gene protein MKS1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein phosphatase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of protein phosphatase type 2A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WD repeat-containing protein 44; uncharacterized protein LOC11436750
    Names
    putative transcription factor WD40-like family
    transducin/WD-like repeat-protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      43112189..43117191
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003630153.4 → XP_003630201.2  uncharacterized protein LOC11436750 isoform X1

      UniProtKB/TrEMBL
      A0A0C3Y5Y4, G7LD38
      Conserved Domains (2) summary
      sd00039
      Location:233 → 289
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:224 → 494
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_024772274.2 → XP_024628042.1  uncharacterized protein LOC11436750 isoform X1

      UniProtKB/TrEMBL
      A0A0C3Y5Y4, G7LD38
      Conserved Domains (2) summary
      sd00039
      Location:233 → 289
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:224 → 494
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_024772273.2 → XP_024628041.1  uncharacterized protein LOC11436750 isoform X1

      UniProtKB/TrEMBL
      A0A0C3Y5Y4, G7LD38
      Conserved Domains (2) summary
      sd00039
      Location:233 → 289
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:224 → 494
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_024772275.2 → XP_024628043.1  uncharacterized protein LOC11436750 isoform X1

      UniProtKB/TrEMBL
      A0A0C3Y5Y4, G7LD38
      Conserved Domains (2) summary
      sd00039
      Location:233 → 289
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:224 → 494
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    5. XM_024772276.2 → XP_024628044.1  uncharacterized protein LOC11436750 isoform X1

      UniProtKB/TrEMBL
      A0A0C3Y5Y4, G7LD38
      Conserved Domains (2) summary
      sd00039
      Location:233 → 289
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:224 → 494
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    6. XM_024772277.2 → XP_024628045.1  WD repeat-containing protein 44 isoform X2

      Conserved Domains (2) summary
      sd00039
      Location:167 → 223
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:158 → 428
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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