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    LOC11428070 bZIP transcription factor 29 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11428070, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11428070
    Gene description
    bZIP transcription factor 29
    Locus tag
    MtrunA17_Chr1g0156051
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11428070 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 1 NC_053042.1 (7688837..7692553)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 1 NC_016407.2 (7617915..7621630)

    Chromosome 1 - NC_053042.1Genomic Context describing neighboring genes Neighboring gene protein BASIC PENTACYSTEINE6 Neighboring gene uncharacterized LOC112421294 Neighboring gene cytochrome P450 71B36 Neighboring gene cytochrome P450 71B37

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bZIP transcription factor 29
    Names
    BZIP transcription factor
    putative transcription factor bZIP family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053042.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      7688837..7692553
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003589342.4 → XP_003589390.1  bZIP transcription factor 29

      See identical proteins and their annotated locations for XP_003589390.1

      UniProtKB/TrEMBL
      G7I6G4
      Conserved Domains (2) summary
      cd14703
      Location:390 → 419
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
      cl25732
      Location:377 → 488
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_024775423.2 → XP_024631191.1  bZIP transcription factor 29

      UniProtKB/TrEMBL
      G7I6G4
      Conserved Domains (2) summary
      cd14703
      Location:390 → 419
      bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
      cl25732
      Location:377 → 488
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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