U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC114278602 nuclear transcription factor Y subunit B-6 [ Camellia sinensis ]

    Gene ID: 114278602, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC114278602
    Gene description
    nuclear transcription factor Y subunit B-6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camellia sinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC114278602 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021026521.1 (897320..905397)

    NW_021026521.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114278584 Neighboring gene uncharacterized LOC114278585 Neighboring gene uncharacterized LOC114278586 Neighboring gene uncharacterized LOC114278587

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_021026521 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nuclear transcription factor Y subunit B-6

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AHAU_CSS_1 Primary Assembly

    Genomic

    1. NW_021026521.1 Reference AHAU_CSS_1 Primary Assembly

      Range
      897320..905397
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028220674.1 → XP_028076475.1  nuclear transcription factor Y subunit B-6

      UniProtKB/TrEMBL
      A0A7J7GXF9
      Conserved Domains (1) summary
      pfam00808
      Location:63 → 127
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases