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    LOC11426586 uncharacterized LOC11426586 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11426586, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11426586
    Gene description
    uncharacterized LOC11426586
    Locus tag
    MtrunA17_Chr8g0380161
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11426586 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (40526265..40537284)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (36447234..36458254)

    Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene stachyose synthase-like Neighboring gene uncharacterized LOC11418018 Neighboring gene ubiquitin-40S ribosomal protein S27a Neighboring gene sulfite exporter TauE/SafE family protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA 5'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of commitment complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC11426586
    Names
    putative tetratricopeptide-like helical domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      40526265..40537284
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039828561.1 → XP_039684495.1  uncharacterized protein LOC11426586 isoform X1

      UniProtKB/TrEMBL
      A0A072TT59
      Conserved Domains (1) summary
      smart00386
      Location:297 → 329
      HAT; HAT (Half-A-TPR) repeats

    2. XM_039828563.1 → XP_039684497.1  uncharacterized protein LOC11426586 isoform X4

      UniProtKB/TrEMBL
      A0A072TT59
      Conserved Domains (1) summary
      smart00386
      Location:297 → 329
      HAT; HAT (Half-A-TPR) repeats

    3. XM_039828562.1 → XP_039684496.1  uncharacterized protein LOC11426586 isoform X2

      UniProtKB/TrEMBL
      A0A072TT59
      Conserved Domains (1) summary
      smart00386
      Location:297 → 329
      HAT; HAT (Half-A-TPR) repeats

    4. XM_003629846.3 → XP_003629894.2  uncharacterized protein LOC11426586 isoform X3

      UniProtKB/TrEMBL
      A0A072TT59, A0A0C3Y527, G7L813
      Conserved Domains (1) summary
      smart00386
      Location:297 → 329
      HAT; HAT (Half-A-TPR) repeats

    5. XM_013591222.2 → XP_013446676.1  uncharacterized protein LOC11426586 isoform X5

      UniProtKB/TrEMBL
      A0A072TT59, A0A072TV09
      Conserved Domains (1) summary
      smart00386
      Location:297 → 329
      HAT; HAT (Half-A-TPR) repeats

    6. XM_039828564.1 → XP_039684498.1  uncharacterized protein LOC11426586 isoform X6

      UniProtKB/TrEMBL
      A0A072TT59
      Conserved Domains (1) summary
      smart00386
      Location:223 → 255
      HAT; HAT (Half-A-TPR) repeats

    7. XM_039828565.1 → XP_039684499.1  uncharacterized protein LOC11426586 isoform X6

      UniProtKB/TrEMBL
      A0A072TT59
      Conserved Domains (1) summary
      smart00386
      Location:223 → 255
      HAT; HAT (Half-A-TPR) repeats

    8. XM_039828566.1 → XP_039684500.1  uncharacterized protein LOC11426586 isoform X7

      UniProtKB/TrEMBL
      A0A072TT59
      Conserved Domains (1) summary
      smart00386
      Location:87 → 119
      HAT; HAT (Half-A-TPR) repeats
    Nucleotide Protein
    Heading Accession and Version

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