U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC11415298 nuclear exosome regulator NRDE2 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11415298, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC11415298
    Gene description
    nuclear exosome regulator NRDE2
    Locus tag
    MtrunA17_Chr4g0006741
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC11415298 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (5357275..5366691)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (5074626..5083998)

    Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase CPRD49 Neighboring gene uncharacterized LOC112421095 Neighboring gene disease resistance protein RUN1 Neighboring gene 40S ribosomal protein S8

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of RNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulatory ncRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nuclear exosome regulator NRDE2
    Names
    protein NRDE2 homolog
    putative siRNA-mediated silencing protein NRDE-2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      5357275..5366691
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024781970.2 → XP_024637738.1  nuclear exosome regulator NRDE2 isoform X1

      Conserved Domains (1) summary
      pfam08424
      Location:290 → 538
      NRDE-2; necessary for RNA interference

    2. XM_003604645.4 → XP_003604693.2  nuclear exosome regulator NRDE2 isoform X2

      UniProtKB/TrEMBL
      A0A0C3WSC2, G7JP36
      Conserved Domains (1) summary
      pfam08424
      Location:290 → 537
      NRDE-2; NRDE-2, necessary for RNA interference
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases