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    LOC11408882 serine/threonine-protein kinase EDR1 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11408882, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11408882
    Gene description
    serine/threonine-protein kinase EDR1
    Locus tag
    MtrunA17_Chr2g0325851
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11408882 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 2 NC_053043.1 (45678411..45705520, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 2 NC_016408.2 (39571313..39598422, complement)

    Chromosome 2 - NC_053043.1Genomic Context describing neighboring genes Neighboring gene protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 Neighboring gene uncharacterized LOC11413989 Neighboring gene paramyosin Neighboring gene uncharacterized LOC11422134

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase EDR1
    Names
    MAP kinase kinase kinase-like protein
    putative protein kinase TKL-CTR1-DRK-1 family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053043.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      45678411..45705520 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013609809.3 → XP_013465263.1  serine/threonine-protein kinase EDR1 isoform X2

      UniProtKB/TrEMBL
      A0A072VBA3, A0A072VCX4
      Conserved Domains (3) summary
      smart00219
      Location:538 → 786
      TyrKc; Tyrosine kinase, catalytic domain
      cd13999
      Location:544 → 786
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
      pfam14381
      Location:62 → 255
      EDR1; Ethylene-responsive protein kinase Le-CTR1

    2. XM_013609811.3 → XP_013465265.1  serine/threonine-protein kinase EDR1 isoform X3

      UniProtKB/TrEMBL
      A0A072VBA3, A0A072VME1
      Conserved Domains (3) summary
      smart00219
      Location:521 → 769
      TyrKc; Tyrosine kinase, catalytic domain
      cd13999
      Location:527 → 769
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
      pfam14381
      Location:62 → 255
      EDR1; Ethylene-responsive protein kinase Le-CTR1

    3. XM_003597082.4 → XP_003597130.2  serine/threonine-protein kinase EDR1 isoform X1

      UniProtKB/TrEMBL
      A0A072VBA3, A0A0C3V7P0, G7IU31
      Conserved Domains (2) summary
      cd13999
      Location:563 → 805
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
      pfam14381
      Location:62 → 255
      EDR1; Ethylene-responsive protein kinase Le-CTR1
    Nucleotide Protein
    Heading Accession and Version

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