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    LOC11408646 NEDD8-conjugating enzyme Ubc12 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11408646, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11408646
    Gene description
    NEDD8-conjugating enzyme Ubc12
    Locus tag
    MtrunA17_Chr5g0403591
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11408646 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (7364013..7367859)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (7350975..7354822)

    Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene UPF0496 protein 1 Neighboring gene geranylgeranyl pyrophosphate synthase 7, chloroplastic Neighboring gene uncharacterized LOC11409946 Neighboring gene uncharacterized LOC11410975

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NEDD8 transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein neddylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NEDD8-conjugating enzyme Ubc12
    Names
    putative aminoacyltransferase, E1 ubiquitin-activating enzyme
    ubiquitin-conjugating enzyme

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      7364013..7367859
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013598065.3 → XP_013453519.1  NEDD8-conjugating enzyme Ubc12

      UniProtKB/TrEMBL
      G7KC51, I3SEF8
      Conserved Domains (1) summary
      pfam00179
      Location:33 → 169
      UQ_con; Ubiquitin-conjugating enzyme
    Nucleotide Protein
    Heading Accession and Version

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