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    SDCBP2 syndecan binding protein 2 [ Vulpes vulpes (red fox) ]

    Gene ID: 112909927, updated on 15-Mar-2024

    Summary

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    Gene symbol
    SDCBP2
    Gene description
    syndecan binding protein 2
    See related
    Ensembl:ENSVVUG00000008038
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vulpes vulpes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
    Orthologs
    human mouse all
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    Genomic context

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    See SDCBP2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356652.1 (308014..318747)

    NW_020356652.1Genomic Context describing neighboring genes Neighboring gene NSFL1 cofactor Neighboring gene FKBP prolyl isomerase 1A Neighboring gene syntaphilin Neighboring gene RAD21 cohesin complex component like 1 Neighboring gene chromosome unknown C20orf202 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020356652 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntenin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference VulVul2.2 Primary Assembly

    Genomic

    1. NW_020356652.1 Reference VulVul2.2 Primary Assembly

      Range
      308014..318747
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025986119.1 → XP_025841904.1  syntenin-2

      UniProtKB/TrEMBL
      A0A3Q7R6Z8
      Related
      ENSVVUP00000010886.1, ENSVVUT00000014277.1
      Conserved Domains (1) summary
      cd00992
      Location:101 → 180
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    Nucleotide Protein Strain
    Heading Accession and Version

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