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    LOC112702270 zinc finger CCCH domain-containing protein 3 [ Arachis hypogaea (peanut) ]

    Gene ID: 112702270, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC112702270
    Gene description
    zinc finger CCCH domain-containing protein 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arachis hypogaea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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    Genomic context

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    See LOC112702270 in Genome Data Viewer
    Location:
    chromosome: Arahy.07
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.07 NC_037624.1 (6398792..6402884)

    Chromosome Arahy.07 - NC_037624.1Genomic Context describing neighboring genes Neighboring gene probable tyrosine-protein phosphatase DSP4 Neighboring gene E3 ubiquitin-protein ligase COP1 Neighboring gene zinc finger CCCH domain-containing protein 3 Neighboring gene uncharacterized LOC112701058

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037624.1 Chromosome Arahy.07 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Genomic

    1. NC_037624.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

      Range
      6398792..6402884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025753240.2 → XP_025609025.1  zinc finger CCCH domain-containing protein 3 isoform X2

      Conserved Domains (1) summary
      pfam00642
      Location:267 → 293
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    2. XM_025753239.2 → XP_025609024.1  zinc finger CCCH domain-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A444YDZ0, A0A445C4N0
      Conserved Domains (1) summary
      pfam00642
      Location:267 → 293
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    Nucleotide Protein
    Heading Accession and Version

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