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    LOC112254491 delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial [ Oncorhynchus tshawytscha (Chinook salmon) ]

    Gene ID: 112254491, updated on 18-Jun-2024

    Summary

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    Gene symbol
    LOC112254491
    Gene description
    delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial
    See related
    Ensembl:ENSOTSG00005028092
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus tshawytscha
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC112254491 in Genome Data Viewer
    Location:
    chromosome: LG07
    Exon count:
    15
    Annotation release Status Assembly LG Location
    101 current Otsh_v2.0 (GCF_018296145.1) LG07 NC_056435.1 (39908678..39921562, complement)
    100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 7 NC_037103.1 (53091390..53100382, complement)

    Linkage Group LG07 - NC_056435.1Genomic Context describing neighboring genes Neighboring gene transcription factor HES-5-like Neighboring gene transcription factor HES-5-like Neighboring gene intermediate filament family orphan 2-like Neighboring gene mRNA turnover protein 4 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-pyrroline-5-carboxylate dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proline catabolic process to glutamate IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Otsh_v2.0 Primary Assembly

    Genomic

    1. NC_056435.1 Reference Otsh_v2.0 Primary Assembly

      Range
      39908678..39921562 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024427152.2 → XP_024282920.1  delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial

      UniProtKB/TrEMBL
      A0A8C8ERG9, A0A8C8H8E3
      Related
      ENSOTSP00005058789.1, ENSOTST00005063995.2
      Conserved Domains (1) summary
      cd07123
      Location:25 → 546
      ALDH_F4-17_P5CDH; Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases