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    nr1i2 nuclear receptor subfamily 1, group I, member 2 [ Oncorhynchus tshawytscha (Chinook salmon) ]

    Gene ID: 112241181, updated on 18-Jun-2024

    Summary

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    Gene symbol
    nr1i2
    Gene description
    nuclear receptor subfamily 1, group I, member 2
    See related
    Ensembl:ENSOTSG00005000476
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus tshawytscha
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Orthologs
    human zebrafish all
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    Genomic context

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    See nr1i2 in Genome Data Viewer
    Location:
    chromosome: LG03
    Exon count:
    9
    Annotation release Status Assembly LG Location
    101 current Otsh_v2.0 (GCF_018296145.1) LG03 NC_056431.1 (63359890..63378249, complement)
    100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 3 NC_037099.1 (66776341..66795559, complement)

    Linkage Group LG03 - NC_056431.1Genomic Context describing neighboring genes Neighboring gene probable G-protein coupled receptor 156 Neighboring gene glycogen synthase kinase-3 beta Neighboring gene uncharacterized LOC112245957 Neighboring gene cell surface glycoprotein CD200 receptor 1-A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear receptor subfamily 1 group I member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Otsh_v2.0 Primary Assembly

    Genomic

    1. NC_056431.1 Reference Otsh_v2.0 Primary Assembly

      Range
      63359890..63378249 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042319819.1 → XP_042175753.1  nuclear receptor subfamily 1 group I member 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C8BQL3
      Conserved Domains (2) summary
      cd06934
      Location:133 → 455
      NR_LBD_PXR_like; The ligand binding domain of xenobiotic receptors:pregnane X receptor and constitutive androstane receptor
      cd07162
      Location:30 → 123
      NR_DBD_PXR; DNA-binding domain of pregnane X receptor (PXRs) is composed of two C4-type zinc fingers

    2. XM_024409337.2 → XP_024265105.1  nuclear receptor subfamily 1 group I member 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C8BQL3, A0A8C8BT06
      Related
      ENSOTSP00005000792.1, ENSOTST00005000895.2
      Conserved Domains (2) summary
      cd06934
      Location:126 → 448
      NR_LBD_PXR_like; The ligand binding domain of xenobiotic receptors:pregnane X receptor and constitutive androstane receptor
      cd07162
      Location:30 → 116
      NR_DBD_PXR; DNA-binding domain of pregnane X receptor (PXRs) is composed of two C4-type zinc fingers

    3. XM_042319820.1 → XP_042175754.1  nuclear receptor subfamily 1 group I member 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C8BQL3
      Conserved Domains (2) summary
      cd06934
      Location:133 → 455
      NR_LBD_PXR_like; The ligand binding domain of xenobiotic receptors:pregnane X receptor and constitutive androstane receptor
      cd07162
      Location:30 → 123
      NR_DBD_PXR; DNA-binding domain of pregnane X receptor (PXRs) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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