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    LOC112169645 cytochrome c oxidase subunit 3 [ Rosa chinensis ]

    Gene ID: 112169645, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC112169645
    Gene description
    cytochrome c oxidase subunit 3
    Locus tag
    RchiOBHm_Chr6g0257961
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rosa chinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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    Genomic context

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    See LOC112169645 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current RchiOBHm-V2 (GCF_002994745.2) 6 NC_037093.1 (13449582..13453151)

    Chromosome 6 - NC_037093.1Genomic Context describing neighboring genes Neighboring gene laccase-15 Neighboring gene E3 ubiquitin-protein ligase MBR2 Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene probable cytochrome c biosynthesis protein Neighboring gene uncharacterized LOC112169644

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037093.1 Chromosome 6 Reference RchiOBHm-V2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cytochrome-c oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial electron transport, cytochrome c to oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: cytochrome c oxidase subunit 3
    Names
    putative H(+)-transporting two-sector ATPase
    putative cytochrome-c oxidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rosa chinensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference RchiOBHm-V2

    Genomic

    1. NC_037093.1 Reference RchiOBHm-V2

      Range
      13449582..13453151
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024306712.2 → XP_024162480.1  LOW QUALITY PROTEIN: cytochrome c oxidase subunit 3

      Conserved Domains (3) summary
      pfam06449
      Location:93 → 143
      DUF1082; Mitochondrial domain of unknown function (DUF1082)
      cl00211
      Location:182 → 444
      Heme_Cu_Oxidase_III_like; Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The ...
      pfam02326
      Location:2 → 82
      YMF19; Plant ATP synthase F0
    Nucleotide Protein
    Heading Accession and Version

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