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    ctbp2a C-terminal binding protein 2a [ Oryzias melastigma (Indian medaka) ]

    Gene ID: 112161475, updated on 10-Jul-2024

    Summary

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    Gene symbol
    ctbp2a
    Gene description
    C-terminal binding protein 2a
    See related
    EnsemblRapid:ENSOMEG00005019060
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias melastigma
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    zebrafish all
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    Genomic context

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    See ctbp2a in Genome Data Viewer
    Location:
    chromosome: LG15
    Exon count:
    15
    Annotation release Status Assembly LG Location
    101 current ASM292280v2 (GCF_002922805.2) LG15 NC_050526.1 (6149543..6221421, complement)
    100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096100.1 (17064577..17098201, complement)

    Linkage Group LG15 - NC_050526.1Genomic Context describing neighboring genes Neighboring gene EEF1A lysine methyltransferase 2 Neighboring gene abraxas 2, BRISC complex subunit Neighboring gene zinc finger, RAN-binding domain containing 1b Neighboring gene uncharacterized LOC112161879 Neighboring gene erythroid differentiation regulatory factor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C-terminal-binding protein 2a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM292280v2 Primary Assembly

    Genomic

    1. NC_050526.1 Reference ASM292280v2 Primary Assembly

      Range
      6149543..6221421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036215555.1 → XP_036071448.1  C-terminal-binding protein 2a isoform X3

      UniProtKB/TrEMBL
      A0A3B3BQB9, A0A834BSQ6
      Conserved Domains (1) summary
      cd05299
      Location:34 → 352
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

    2. XM_036215551.1 → XP_036071444.1  C-terminal-binding protein 2a isoform X1

      UniProtKB/TrEMBL
      A0A3B3D8V4, A0A834L027
      Conserved Domains (1) summary
      cd05299
      Location:34 → 352
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

    3. XM_036215550.1 → XP_036071443.1  C-terminal-binding protein 2a isoform X1

      UniProtKB/TrEMBL
      A0A3B3D8V4, A0A834L027
      Conserved Domains (1) summary
      cd05299
      Location:34 → 352
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

    4. XM_036215549.1 → XP_036071442.1  C-terminal-binding protein 2a isoform X1

      UniProtKB/TrEMBL
      A0A3B3D8V4, A0A834L027
      Related
      ENSOMEP00005043161.1, ENSOMET00005048386.1
      Conserved Domains (1) summary
      cd05299
      Location:34 → 352
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

    5. XM_036215552.1 → XP_036071445.1  C-terminal-binding protein 2a isoform X1

      UniProtKB/TrEMBL
      A0A3B3D8V4, A0A834L027
      Conserved Domains (1) summary
      cd05299
      Location:34 → 352
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

    6. XM_036215554.1 → XP_036071447.1  C-terminal-binding protein 2a isoform X2

      UniProtKB/TrEMBL
      A0A3B3BPA8, A0A834L027
      Conserved Domains (1) summary
      cd05299
      Location:22 → 340
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

    7. XM_036215553.1 → XP_036071446.1  C-terminal-binding protein 2a isoform X2

      UniProtKB/TrEMBL
      A0A3B3BPA8, A0A834L027
      Related
      ENSOMEP00005043159.1, ENSOMET00005048384.1
      Conserved Domains (1) summary
      cd05299
      Location:22 → 340
      CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor
    Nucleotide Protein Strain
    Heading Accession and Version

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