U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC111983152 probable WRKY transcription factor 40 [ Quercus suber ]

    Gene ID: 111983152, updated on 18-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC111983152
    Gene description
    probable WRKY transcription factor 40
    Locus tag
    CFP56_030776
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Quercus suber
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
    Also known as
    WRKY40_1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC111983152 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current Cork oak 2.0 (GCF_002906115.3) Unplaced Scaffold NW_027069980.1 (266505..269147, complement)
    100 previous assembly CorkOak1.0 (GCF_002906115.1) Unplaced Scaffold NW_019806419.1 (524382..526948)

    NW_027069980.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136063472 Neighboring gene uncharacterized LOC112041017 Neighboring gene uncharacterized LOC136063476 Neighboring gene uncharacterized LOC136063470

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable WRKY transcription factor 40
    Names
    putative wrky transcription factor 40

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_002906115.3-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cork oak 2.0

    Genomic

    1. NW_027069980.1 Reference Cork oak 2.0

      Range
      266505..269147 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_065763912.1 → XP_065619984.1  probable WRKY transcription factor 40

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases