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    USP48 ubiquitin specific peptidase 48 [ Cyanistes caeruleus (blue tit) ]

    Gene ID: 111938446, updated on 3-Aug-2024

    Summary

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    Gene symbol
    USP48
    Gene description
    ubiquitin specific peptidase 48
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cyanistes caeruleus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Cyanistes
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See USP48 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    65
    Annotation release Status Assembly Chr Location
    100 current cyaCae2 (GCF_002901205.1) 21 Unlocalized Scaffold NW_019776526.1 (202413..268295)

    NW_019776526.1Genomic Context describing neighboring genes Neighboring gene erythroblast membrane associated protein (Scianna blood group) Neighboring gene proproteinase E-like Neighboring gene alkaline phosphatase, biomineralization associated Neighboring gene endothelin converting enzyme 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019776526 Chromosome 21 Unlocalized Scaffold Reference cyaCae2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basement membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 48

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference cyaCae2

    Genomic

    1. NW_019776526.1 Reference cyaCae2

      Range
      202413..268295
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023940176.1 → XP_023795944.1  LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 48

      Conserved Domains (12) summary
      cd05743
      Location:164 → 241
      Ig_Perlecan_like; Immunoglobulin (Ig)-like domain of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2, and similar domains
      cd05754
      Location:1499 → 1584
      Ig_Perlecan_like; Igmmunoglobulin (Ig)-like domain found in Perlecan and similar proteins
      cd01795
      Location:2533 → 2639
      USP48_C; USP ubiquitin-specific protease
      smart00180
      Location:1341 → 1389
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      smart00410
      Location:1411 → 1491
      IG_like; Immunoglobulin like
      cd00055
      Location:888 → 937
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd00112
      Location:68 → 102
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
      cd02668
      Location:1698 → 2022
      Peptidase_C19L; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam00053
      Location:1003 → 1050
      Laminin_EGF; Laminin EGF domain
      pfam00057
      Location:111 → 146
      Ldl_recept_a; Low-density lipoprotein receptor domain class A
      pfam00052
      Location:1124 → 1243
      Laminin_B; Laminin B (Domain IV)
      pfam06337
      Location:2086 → 2157
      DUSP; DUSP domain
    Nucleotide Protein
    Heading Accession and Version

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