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    LOC111811468 transcription factor PIF1-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111811468, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111811468
    Gene description
    transcription factor PIF1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111811468 in Genome Data Viewer
    Location:
    chromosome: LG15
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG15 NC_036652.1 (933888..939910)

    Chromosome LG15 - NC_036652.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111811436 Neighboring gene tetraspanin-20-like Neighboring gene 26S proteasome regulatory subunit 4 homolog B-like Neighboring gene glycine-rich protein 5-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036652.1 Chromosome LG15 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor PIF1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036652.1 Reference ASM280686v2 Primary Assembly

      Range
      933888..939910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023698332.1 → XP_023554100.1  transcription factor PIF1-like isoform X2

      Conserved Domains (2) summary
      smart00353
      Location:317 → 365
      HLH; helix loop helix domain
      cl25887
      Location:360 → 467
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    2. XM_023698330.1 → XP_023554098.1  transcription factor PIF1-like isoform X1

      Conserved Domains (2) summary
      smart00353
      Location:317 → 365
      HLH; helix loop helix domain
      cl25887
      Location:360 → 500
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    3. XM_023698331.1 → XP_023554099.1  transcription factor PIF1-like isoform X2

      Conserved Domains (2) summary
      smart00353
      Location:317 → 365
      HLH; helix loop helix domain
      cl25887
      Location:360 → 467
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    RNA

    1. XR_002817548.1 RNA Sequence

    2. XR_002817547.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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