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    LOC111811339 tobamovirus multiplication protein 2A-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111811339, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111811339
    Gene description
    tobamovirus multiplication protein 2A-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111811339 in Genome Data Viewer
    Location:
    chromosome: LG15
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG15 NC_036652.1 (4617724..4622812)

    Chromosome LG15 - NC_036652.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111811567 Neighboring gene two-component response regulator-like APRR2 Neighboring gene peroxidase 20 Neighboring gene tobamovirus multiplication protein 2B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036652.1 Chromosome LG15 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tobamovirus multiplication protein 2A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036652.1 Reference ASM280686v2 Primary Assembly

      Range
      4617724..4622812
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023698129.1 → XP_023553897.1  tobamovirus multiplication protein 2A-like

      Conserved Domains (1) summary
      pfam00335
      Location:9 → 114
      Tetraspannin; Tetraspanin family
    Nucleotide Protein
    Heading Accession and Version

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