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    LOC111806173 caffeoylshikimate esterase-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111806173, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111806173
    Gene description
    caffeoylshikimate esterase-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111806173 in Genome Data Viewer
    Location:
    chromosome: LG01
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG01 NC_036638.1 (1174479..1176450, complement)

    Chromosome LG01 - NC_036638.1Genomic Context describing neighboring genes Neighboring gene dirigent protein 24 Neighboring gene spliceosome-associated protein 130 A Neighboring gene 60S ribosomal protein L35-like Neighboring gene 3-ketoacyl-CoA synthase 19-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036638.1 Chromosome LG01 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caffeoylshikimate esterase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036638.1 Reference ASM280686v2 Primary Assembly

      Range
      1174479..1176450 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023691549.1 → XP_023547317.1  caffeoylshikimate esterase-like

      Conserved Domains (1) summary
      cl21494
      Location:7 → 290
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

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