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    LOC111804396 casparian strip membrane protein 1 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111804396, updated on 1-Jun-2019

    Summary

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    Gene symbol
    LOC111804396
    Gene description
    casparian strip membrane protein 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111804396 in Genome Data Viewer
    Location:
    chromosome: LG10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG10 NC_036647.1 (1740861..1742125)

    Chromosome LG10 - NC_036647.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 55 homolog Neighboring gene probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY Neighboring gene mRNA-decapping enzyme-like protein Neighboring gene uncharacterized LOC111803236

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036647.1 Chromosome LG10 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    casparian strip membrane protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036647.1 Reference ASM280686v2 Primary Assembly

      Range
      1740861..1742125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023689184.1 → XP_023544952.1  casparian strip membrane protein 1

      Conserved Domains (1) summary
      pfam04535
      Location:47 → 190
      DUF588; Domain of unknown function (DUF588)
    Nucleotide Protein
    Heading Accession and Version

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