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    LOC111804239 transcription initiation factor TFIID subunit 12 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111804239, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111804239
    Gene description
    transcription initiation factor TFIID subunit 12
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111804239 in Genome Data Viewer
    Location:
    chromosome: LG10
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG10 NC_036647.1 (1634723..1641126, complement)

    Chromosome LG10 - NC_036647.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At5g03610-like Neighboring gene GDSL esterase/lipase At5g03610-like Neighboring gene zinc finger A20 and AN1 domain-containing stress-associated protein 6-like Neighboring gene probable purple acid phosphatase 20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036647.1 Chromosome LG10 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SLIK (SAGA-like) complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036647.1 Reference ASM280686v2 Primary Assembly

      Range
      1634723..1641126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023688970.1 → XP_023544738.1  transcription initiation factor TFIID subunit 12

      Conserved Domains (2) summary
      cd07981
      Location:380 → 451
      TAF12; TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
      cl25764
      Location:247 → 367
      PAT1; Topoisomerase II-associated protein PAT1

    RNA

    1. XR_002816489.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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