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    LOC111804192 pentatricopeptide repeat-containing protein At2g37320 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111804192, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111804192
    Gene description
    pentatricopeptide repeat-containing protein At2g37320
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111804192 in Genome Data Viewer
    Location:
    chromosome: LG10
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG10 NC_036647.1 (4822963..4824671)

    Chromosome LG10 - NC_036647.1Genomic Context describing neighboring genes Neighboring gene protein MODIFIER OF SNC1 11-like Neighboring gene dirigent protein 17-like Neighboring gene uncharacterized LOC111803551 Neighboring gene uncharacterized LOC111804194 Neighboring gene pathogenesis-related protein 1-like Neighboring gene GDSL esterase/lipase At5g41890

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036647.1 Chromosome LG10 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At2g37320

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036647.1 Reference ASM280686v2 Primary Assembly

      Range
      4822963..4824671
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023688912.1 → XP_023544680.1  pentatricopeptide repeat-containing protein At2g37320

      Conserved Domains (2) summary
      sd00004
      Location:300 → 328
      PPR; PPR repeat [structural motif]
      cl25449
      Location:134 → 522
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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