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    LOC111802474 transcription factor ICE1-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111802474, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111802474
    Gene description
    transcription factor ICE1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111802474 in Genome Data Viewer
    Location:
    chromosome: LG09
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG09 NC_036646.1 (8432370..8436291, complement)

    Chromosome LG09 - NC_036646.1Genomic Context describing neighboring genes Neighboring gene chromophore lyase CRL, chloroplastic-like Neighboring gene protein MHF1 homolog Neighboring gene coiled-coil domain-containing protein SCD2-like Neighboring gene transcription factor bHLH137-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036646.1 Chromosome LG09 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor ICE1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036646.1 Reference ASM280686v2 Primary Assembly

      Range
      8432370..8436291 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023686858.1 → XP_023542626.1  transcription factor ICE1-like isoform X1

      Conserved Domains (2) summary
      cd04873
      Location:475 → 535
      ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
      smart00353
      Location:362 → 406
      HLH; helix loop helix domain

    2. XM_023686859.1 → XP_023542627.1  transcription factor ICE1-like isoform X2

      Conserved Domains (2) summary
      cd04873
      Location:475 → 535
      ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
      smart00353
      Location:362 → 406
      HLH; helix loop helix domain

    3. XM_023686860.1 → XP_023542628.1  transcription factor ICE1-like isoform X3

      Conserved Domains (2) summary
      cd04873
      Location:475 → 535
      ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
      smart00353
      Location:362 → 406
      HLH; helix loop helix domain
    Nucleotide Protein
    Heading Accession and Version

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