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    LOC111796957 L-ascorbate oxidase homolog [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111796957, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111796957
    Gene description
    L-ascorbate oxidase homolog
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111796957 in Genome Data Viewer
    Location:
    chromosome: LG06
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG06 NC_036643.1 (194441..199392)

    Chromosome LG06 - NC_036643.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111796959 Neighboring gene uncharacterized LOC111796960 Neighboring gene putative tRNA pseudouridine synthase Pus10 Neighboring gene prolyl endopeptidase-like Neighboring gene uncharacterized LOC111796961

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036643.1 Chromosome LG06 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-ascorbate oxidase homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036643.1 Reference ASM280686v2 Primary Assembly

      Range
      194441..199392
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023679782.1 → XP_023535550.1  L-ascorbate oxidase homolog

      Conserved Domains (1) summary
      cl28276
      Location:22 → 539
      SufI; Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) [Cell cycle control, cell division, chromosome partitioning, Inorganic ion transport and metabolism, Cell wall/membrane/envelope biogenes
    Nucleotide Protein
    Heading Accession and Version

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