U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC111796028 exosome complex component RRP41-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111796028, updated on 11-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC111796028
    Gene description
    exosome complex component RRP41-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC111796028 in Genome Data Viewer
    Location:
    chromosome: LG05
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG05 NC_036642.1 (5018628..5021483)

    Chromosome LG05 - NC_036642.1Genomic Context describing neighboring genes Neighboring gene lysM domain receptor-like kinase 3 Neighboring gene uncharacterized LOC111795962 Neighboring gene protein CNGC15b-like Neighboring gene cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_036642.1 Chromosome LG05 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in U4 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear mRNA surveillance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in poly(A)-dependent snoRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytoplasmic exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    exosome complex component RRP41-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036642.1 Reference ASM280686v2 Primary Assembly

      Range
      5018628..5021483
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023678716.1 → XP_023534484.1  exosome complex component RRP41-like isoform X1

      Conserved Domains (1) summary
      cd11371
      Location:44 → 252
      RNase_PH_MTR3; MTR3 subunit of eukaryotic exosome

    2. XM_023678717.1 → XP_023534485.1  exosome complex component RRP41-like isoform X2

      Conserved Domains (1) summary
      cd11371
      Location:44 → 250
      RNase_PH_MTR3; MTR3 subunit of eukaryotic exosome
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases