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    LOC111794874 homeobox protein knotted-1-like 7 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111794874, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111794874
    Gene description
    homeobox protein knotted-1-like 7
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111794874 in Genome Data Viewer
    Location:
    chromosome: LG05
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG05 NC_036642.1 (1677822..1682781)

    Chromosome LG05 - NC_036642.1Genomic Context describing neighboring genes Neighboring gene agamous-like MADS-box protein AGL19 Neighboring gene ubiquitin carboxyl-terminal hydrolase MINDY-1-like Neighboring gene bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like Neighboring gene molybdenum cofactor sulfurase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036642.1 Chromosome LG05 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein knotted-1-like 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036642.1 Reference ASM280686v2 Primary Assembly

      Range
      1677822..1682781
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023677049.1 → XP_023532817.1  homeobox protein knotted-1-like 7 isoform X1

      Conserved Domains (4) summary
      pfam03789
      Location:204 → 225
      ELK; ELK domain
      pfam03790
      Location:36 → 74
      KNOX1; KNOX1 domain
      pfam03791
      Location:96 → 147
      KNOX2; KNOX2 domain
      pfam05920
      Location:244 → 283
      Homeobox_KN; Homeobox KN domain

    2. XM_023677050.1 → XP_023532818.1  homeobox protein knotted-1-like 7 isoform X2

      Conserved Domains (4) summary
      pfam03789
      Location:204 → 225
      ELK; ELK domain
      pfam03790
      Location:36 → 74
      KNOX1; KNOX1 domain
      pfam03791
      Location:96 → 147
      KNOX2; KNOX2 domain
      pfam05920
      Location:244 → 283
      Homeobox_KN; Homeobox KN domain
    Nucleotide Protein
    Heading Accession and Version

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