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    LOC111793272 respiratory burst oxidase homolog protein A-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111793272, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111793272
    Gene description
    respiratory burst oxidase homolog protein A-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111793272 in Genome Data Viewer
    Location:
    chromosome: LG04
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG04 NC_036641.1 (11654023..11660351)

    Chromosome LG04 - NC_036641.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111793270 Neighboring gene phosphoserine phosphatase, chloroplastic Neighboring gene uncharacterized LOC111793275 Neighboring gene mitochondrial substrate carrier family protein E-like Neighboring gene DNAJ protein JJJ1 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036641.1 Chromosome LG04 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD(P)H oxidase H2O2-forming activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    respiratory burst oxidase homolog protein A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036641.1 Reference ASM280686v2 Primary Assembly

      Range
      11654023..11660351
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023675082.1 → XP_023530850.1  respiratory burst oxidase homolog protein A-like

      Conserved Domains (4) summary
      cd06186
      Location:513 → 788
      NOX_Duox_like_FAD_NADP; NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX ...
      pfam01794
      Location:311 → 459
      Ferric_reduct; Ferric reductase like transmembrane component
      pfam08414
      Location:61 → 143
      NADPH_Ox; Respiratory burst NADPH oxidase
      pfam13499
      Location:149 → 220
      EF-hand_7; EF-hand domain pair

    2. XM_023675083.1 → XP_023530851.1  respiratory burst oxidase homolog protein A-like

      Conserved Domains (4) summary
      cd06186
      Location:513 → 788
      NOX_Duox_like_FAD_NADP; NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX ...
      pfam01794
      Location:311 → 459
      Ferric_reduct; Ferric reductase like transmembrane component
      pfam08414
      Location:61 → 143
      NADPH_Ox; Respiratory burst NADPH oxidase
      pfam13499
      Location:149 → 220
      EF-hand_7; EF-hand domain pair
    Nucleotide Protein
    Heading Accession and Version

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