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    LOC111791668 ubiquitin receptor RAD23b-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111791668, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111791668
    Gene description
    ubiquitin receptor RAD23b-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111791668 in Genome Data Viewer
    Location:
    chromosome: LG03
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG03 NC_036640.1 (5757499..5761666, complement)

    Chromosome LG03 - NC_036640.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111790165 Neighboring gene uncharacterized LOC111790164 Neighboring gene uncharacterized LOC111790093 Neighboring gene putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 Neighboring gene uncharacterized LOC111791233

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036640.1 Chromosome LG03 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proteasome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin receptor RAD23b-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036640.1 Reference ASM280686v2 Primary Assembly

      Range
      5757499..5761666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023673104.1 → XP_023528872.1  ubiquitin receptor RAD23b-like

      Conserved Domains (1) summary
      cl28408
      Location:1 → 380
      UBQ; Ubiquitin homologues
    Nucleotide Protein
    Heading Accession and Version

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