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    LOC111788699 threonylcarbamoyladenosine tRNA methylthiotransferase [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111788699, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111788699
    Gene description
    threonylcarbamoyladenosine tRNA methylthiotransferase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111788699 in Genome Data Viewer
    Location:
    chromosome: LG02
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG02 NC_036639.1 (9513265..9524867)

    Chromosome LG02 - NC_036639.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111789092 Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like Neighboring gene FT-interacting protein 1-like Neighboring gene chaperone protein ClpB1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036639.1 Chromosome LG02 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables N6-threonylcarbomyladenosine methylthiotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA methylthiolation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    threonylcarbamoyladenosine tRNA methylthiotransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036639.1 Reference ASM280686v2 Primary Assembly

      Range
      9513265..9524867
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023669142.1 → XP_023524910.1  threonylcarbamoyladenosine tRNA methylthiotransferase

      Conserved Domains (1) summary
      cl27627
      Location:65 → 486
      UPF0004; Uncharacterized protein family UPF0004
    Nucleotide Protein
    Heading Accession and Version

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