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    LOC111788526 probable phosphoinositide phosphatase SAC9 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111788526, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111788526
    Gene description
    probable phosphoinositide phosphatase SAC9
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111788526 in Genome Data Viewer
    Location:
    chromosome: LG02
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG02 NC_036639.1 (3870682..3881545, complement)

    Chromosome LG02 - NC_036639.1Genomic Context describing neighboring genes Neighboring gene anthocyanidin 3-O-glucosyltransferase 2-like Neighboring gene anthocyanidin 3-O-glucosyltransferase 2-like Neighboring gene anthocyanidin 3-O-glucosyltransferase 2-like Neighboring gene leucine-rich repeat extensin-like protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036639.1 Chromosome LG02 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable phosphoinositide phosphatase SAC9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036639.1 Reference ASM280686v2 Primary Assembly

      Range
      3870682..3881545 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023668865.1 → XP_023524633.1  probable phosphoinositide phosphatase SAC9

      Conserved Domains (3) summary
      smart00456
      Location:512 → 543
      WW; Domain with 2 conserved Trp (W) residues
      pfam02383
      Location:88 → 395
      Syja_N; SacI homology domain
      cl27008
      Location:337 → 586
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    Nucleotide Protein
    Heading Accession and Version

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