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    LOC111781595 transcription factor bHLH101-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111781595, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111781595
    Gene description
    transcription factor bHLH101-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111781595 in Genome Data Viewer
    Location:
    chromosome: LG19
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG19 NC_036656.1 (925435..927405, complement)

    Chromosome LG19 - NC_036656.1Genomic Context describing neighboring genes Neighboring gene SPX and EXS domain-containing protein 1-like Neighboring gene transcription factor bHLH100-like Neighboring gene TBCC domain-containing protein 1-like Neighboring gene zinc finger CCCH domain-containing protein 31-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036656.1 Chromosome LG19 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH101-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036656.1 Reference ASM280686v2 Primary Assembly

      Range
      925435..927405 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023662281.1 → XP_023518049.1  transcription factor bHLH101-like

      Conserved Domains (1) summary
      pfam00010
      Location:71 → 123
      HLH; Helix-loop-helix DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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