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    LOC111484304 peptidyl-tRNA hydrolase 2, mitochondrial-like [ Cucurbita maxima (winter squash) ]

    Gene ID: 111484304, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111484304
    Gene description
    peptidyl-tRNA hydrolase 2, mitochondrial-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita maxima
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111484304 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current Cmax_1.0 (GCF_002738345.1) Unplaced Scaffold NW_019272025.1 (1801886..1805926, complement)

    NW_019272025.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 89A2-like Neighboring gene lysine-specific demethylase JMJ706-like Neighboring gene binding partner of ACD11 1-like Neighboring gene anaphase-promoting complex subunit 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019272025 Unplaced Scaffold Reference Cmax_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aminoacyl-tRNA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-tRNA hydrolase 2, mitochondrial-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita maxima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmax_1.0

    Genomic

    1. NW_019272025.1 Reference Cmax_1.0

      Range
      1801886..1805926 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023130849.1 → XP_022986617.1  peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2

      UniProtKB/TrEMBL
      A0A6J1J827
      Conserved Domains (1) summary
      cd02430
      Location:66 → 179
      PTH2; Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in ...

    2. XM_023130848.1 → XP_022986616.1  peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X1

      UniProtKB/TrEMBL
      A0A6J1JBP2
      Conserved Domains (1) summary
      cd02430
      Location:68 → 181
      PTH2; Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in ...
    Nucleotide Protein
    Heading Accession and Version

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